<?xml version="1.0" encoding="UTF-8"?><rss version="2.0"
	xmlns:content="http://purl.org/rss/1.0/modules/content/"
	xmlns:wfw="http://wellformedweb.org/CommentAPI/"
	xmlns:dc="http://purl.org/dc/elements/1.1/"
	xmlns:atom="http://www.w3.org/2005/Atom"
	xmlns:sy="http://purl.org/rss/1.0/modules/syndication/"
	xmlns:slash="http://purl.org/rss/1.0/modules/slash/"
	>

<channel>
	<title>Genome sequencing &#8211; Asia Pacific Report</title>
	<atom:link href="https://asiapacificreport.nz/tag/genome-sequencing/feed/" rel="self" type="application/rss+xml" />
	<link>https://asiapacificreport.nz</link>
	<description>Independent Asia Pacific news and analysis</description>
	<lastBuildDate>Fri, 20 Aug 2021 00:13:49 +0000</lastBuildDate>
	<language>en-US</language>
	<sy:updatePeriod>
	hourly	</sy:updatePeriod>
	<sy:updateFrequency>
	1	</sy:updateFrequency>
	
	<item>
		<title>NZ&#8217;s covid-19 outbreak linked to case from Australia &#8211; now 21 cases</title>
		<link>https://asiapacificreport.nz/2021/08/19/nzs-covid-19-outbreak-linked-to-case-from-australia-now-21-cases/</link>
		
		<dc:creator><![CDATA[APR editor]]></dc:creator>
		<pubDate>Thu, 19 Aug 2021 04:31:24 +0000</pubDate>
				<category><![CDATA[Coronavirus]]></category>
		<category><![CDATA[Featured]]></category>
		<category><![CDATA[Global]]></category>
		<category><![CDATA[Health and Fitness]]></category>
		<category><![CDATA[New Zealand]]></category>
		<category><![CDATA[Pacific Report]]></category>
		<category><![CDATA[RNZ Pacific]]></category>
		<category><![CDATA[Syndicate]]></category>
		<category><![CDATA[Australia]]></category>
		<category><![CDATA[covid-19]]></category>
		<category><![CDATA[Delta variant]]></category>
		<category><![CDATA[Genome sequencing]]></category>
		<category><![CDATA[Pandemic]]></category>
		<category><![CDATA[Public health]]></category>
		<category><![CDATA[Public health and safety]]></category>
		<category><![CDATA[Virus clusters]]></category>
		<guid isPermaLink="false">https://asiapacificreport.nz/?p=62182</guid>

					<description><![CDATA[RNZ News New Zealand&#8217;s current cases of covid-19 &#8212; the first community outbreak for six months &#8212; have been linked to a traveller who arrived from Australia and was taken to Middlemore Hospital earlier this week. Prime Minister Jacinda Ardern and Director-General of Health Dr Ashley Bloomfield have provided a covid-19 update on day two ]]></description>
										<content:encoded><![CDATA[<p><a href="https://www.rnz.co.nz/news/national/"><em>RNZ News</em></a></p>
<p>New Zealand&#8217;s current cases of covid-19 &#8212; the first community outbreak for six months &#8212; have been linked to a traveller who arrived from Australia and was taken to Middlemore Hospital earlier this week.</p>
<p>Prime Minister Jacinda Ardern and Director-General of Health Dr Ashley Bloomfield have provided a covid-19 update on day two of the nationwide lockdown, when it was revealed there were now <a href="https://www.rnz.co.nz/news/national/449505/covid-19-update-11-new-community-cases-and-8-in-managed-isolation">21 community cases</a>.</p>
<p>Ardern said the current positive cases had been linked via genome sequencing to a traveller who arrived from NSW on a managed red zone flight.</p>
<ul>
<li><a href="https://asiapacificreport.nz/2021/08/18/nz-lockdown-streets-silenced-10-covid-cases-police-make-arrests/"><strong>READ MORE:</strong> NZ lockdown streets silenced, 10 covid cases, police make ‘conspiracy’ arrests</a></li>
<li><a href="https://www.rnz.co.nz/news/national/449442/delta-outbreak-numbers-could-reach-over-120-bloomfield">Delta outbreak numbers could reach over 120 – Bloomfield</a></li>
<li><a href="https://asiapacificreport.nz/?s=NZ+covid">Other NZ covid reports</a></li>
<li><a href="https://www.rnz.co.nz/news/national/449472/live-covid-19-updates-nz-in-day-two-of-lockdown-as-case-numbers-rise">Follow RNZ&#8217;s live blog for covid-19 updates</a></li>
</ul>
<p>That person returned a positive day one test on August 9 and was moved from the Crown Plaza hotel to the Jet Park facility.</p>
<p>They were then transferred to Middlemore Hospital on August 16.</p>
<p>Ardern said the period in which cases were in the community was relatively short, but new information could change this conclusion.</p>
<p>She said primary lines of investigation were staff at the Crown Plaza, staff at the Jet Park facility and staff involved in their arrival and transport. Middlemore Hospital was not part of the investigation.</p>
<p>Customs were investigating footage and identifying areas of interest and testing staff.</p>
<p>&#8220;Nothing has eventuated from this line of inquiry to date,&#8221; she said.</p>
<p>Staff at Jet Park and Crown Plaza were being retested.</p>
<p><b>Watch the update  </b></p>
<div class="embedded-media brightcove-video">
<div class="fluidvids"><iframe class="fluidvids-item" src="https://players.brightcove.net/6093072280001/default_default/index.html?videoId=6268554634001" width="480" height="270" frameborder="0" allowfullscreen="allowfullscreen" data-fluidvids="loaded" data-mce-fragment="1"></iframe></div>
</div>
<p><em>Today&#8217;s covid media briefing by Prime Minister Jacinda Ardern. Video: RNZ News</em></p>
<p>Ardern said a family adjacent to the case at the Crown Plaza had now tested positive for covid on their day 12 test.</p>
<p>&#8220;That means we&#8217;re dealing with a high level of infectivity in this case.&#8221;</p>
<p>She said everyone at the Crown Plaza would stay on while the usual protocols were undertaken.</p>
<p>Ardern said while compliance across the managed isolation sites for vaccination had been very high, &#8220;we will continue our search in a thorough way across both sites as you would expect&#8221;.</p>
<p>Ardern thanked the first positive case for getting tested.</p>
<p>&#8220;If it wasn&#8217;t for you getting tested when you did, this could be a much much more difficult situation.</p>
<p>&#8220;Having said that, we&#8217;re prepared for cases to get worse before they get better, that is always the pattern in these outbreaks. But today, we believe we&#8217;ve uncovered the piece of the puzzle we were looking for,&#8221; she said.</p>
<figure id="attachment_62194" aria-describedby="caption-attachment-62194" style="width: 680px" class="wp-caption alignnone"><img fetchpriority="high" decoding="async" class="wp-image-62194 size-full" src="https://asiapacificreport.nz/wp-content/uploads/2021/08/Stopping-covid-in-NZ-APR-680wide.png" alt="United Against Covid-19 " width="680" height="580" srcset="https://asiapacificreport.nz/wp-content/uploads/2021/08/Stopping-covid-in-NZ-APR-680wide.png 680w, https://asiapacificreport.nz/wp-content/uploads/2021/08/Stopping-covid-in-NZ-APR-680wide-300x256.png 300w, https://asiapacificreport.nz/wp-content/uploads/2021/08/Stopping-covid-in-NZ-APR-680wide-492x420.png 492w" sizes="(max-width: 680px) 100vw, 680px" /><figcaption id="caption-attachment-62194" class="wp-caption-text">A &#8220;stopping delta&#8221; promo advertisement of the Covid-19 United Against Covid-19 campaign mounted by the NZ government. Image: NZ govt flyer/APR</figcaption></figure>
<p><strong>Stamping out ability improved</strong><br />
&#8220;That means our ability to circle the virus, lock it down, and stamp it out generally has greatly improved.&#8221;</p>
<p>Dr Bloomfield said all cases in the community are being transferred safely to a quarantine facility or are already there.</p>
<p>He said 12 of the 21 cases had already been confirmed as being part of the same Auckland cluster. A further eight wdere currently being investigated.</p>
<p>&#8220;These new community cases are not unexpected, as the prime minister said, and we would expect the number of cases to continue to grow in particular because of the large number of locations of interest and the mobility of these cases over the few days before the lockdown started.&#8221;</p>
<p>As of this morning, more than 360 individual contacts had been identified, although this did exclude contacts from large settings.</p>
<p><strong>Number will increase</strong><br />
&#8220;Through the day-to-day, that number will increase significantly.&#8221;</p>
<p>Dr Bloomfield said they were fielding a large number of complaints about people holding gatherings and they were being referred to police.</p>
<p>&#8220;As you can see from that update, level 4 is where New Zealand needs to be at the moment,&#8221; Ardern said.</p>
<p>Ardern said ministers would meet tomorrow morning to decide the lockdown level for the rest of the country outside Auckland and Coromandel. The decision would be shared at tomorrow&#8217;s 1pm update.</p>
<p><em>This article is republished under a community partnership agreement with RNZ.</em></p>
]]></content:encoded>
					
		
		
			</item>
		<item>
		<title>13 more covid positive cases on NZ quarantined fishing vessel Viking Bay</title>
		<link>https://asiapacificreport.nz/2021/07/13/13-more-covid-positive-cases-on-nz-quarantined-fishing-vessel-viking-bay/</link>
		
		<dc:creator><![CDATA[APR editor]]></dc:creator>
		<pubDate>Tue, 13 Jul 2021 01:42:20 +0000</pubDate>
				<category><![CDATA[Coronavirus]]></category>
		<category><![CDATA[Featured]]></category>
		<category><![CDATA[Fisheries]]></category>
		<category><![CDATA[Global]]></category>
		<category><![CDATA[Health and Fitness]]></category>
		<category><![CDATA[New Zealand]]></category>
		<category><![CDATA[Pacific Report]]></category>
		<category><![CDATA[RNZ Pacific]]></category>
		<category><![CDATA[Syndicate]]></category>
		<category><![CDATA[covid-19]]></category>
		<category><![CDATA[Fishing vessels]]></category>
		<category><![CDATA[Genome sequencing]]></category>
		<category><![CDATA[Maritime safety]]></category>
		<category><![CDATA[Pandemic]]></category>
		<category><![CDATA[Quarantine]]></category>
		<category><![CDATA[Viking Bay]]></category>
		<guid isPermaLink="false">https://asiapacificreport.nz/?p=60354</guid>

					<description><![CDATA[RNZ News Another 13 crew from the quarantined fishing vessel Viking Bay have tested positive to covid-19, New Zealand&#8217;s Ministry of Health says. Two crew had previously been reported as confirmed with the virus. All 15 mariners have been transferred to an a quarantine facility onshore in Wellington. READ MORE: 15-year-old girl among latest Fiji ]]></description>
										<content:encoded><![CDATA[<p><a href="https://www.rnz.co.nz/news/national/"><em>RNZ News</em></a></p>
<p>Another 13 crew from the quarantined fishing vessel Viking Bay have tested positive to covid-19, New Zealand&#8217;s Ministry of Health says.</p>
<p>Two crew had previously been reported as confirmed with the virus.</p>
<p>All 15 mariners have been transferred to an a quarantine facility onshore in Wellington.</p>
<ul>
<li><a href="https://asiapacificreport.nz/2021/07/12/15-year-old-girl-among-latest-fiji-covid-deaths-as-virus-cases-soar-over-11000/"><strong>READ MORE:</strong> 15-year-old girl among latest Fiji covid deaths as virus cases soar over 11,000</a></li>
<li><a href="https://asiapacificreport.nz/?s=Fiji+covid+crisis">Other Fiji covid crisis reports</a></li>
</ul>
<p>Five remained on board to maintain the safety of the vessel and have returned negative test results so far. The ministry said they would be tested again in coming days.</p>
<p>Of the crew who had now returned a positive result, 12 were regarded as being in the early stages of their infection. One returned a result indicating either a very early infection or a historical infection.</p>
<p>The initial two mariners to test positive were in a group of nine who arrived in Auckland on 5 July without having to quarantine. They had provided negative covid-19 tests before they flew into Auckland and had been <a href="https://www.rnz.co.nz/news/national/446354/covid-19-mariners-driven-from-auckland-to-taranaki-pose-very-low-risk">driven to New Plymouth</a> as part of the ship&#8217;s crew change.</p>
<p>One of the crew was confirmed last week to have the delta variant. No link had been shown between this case and any other cases previously identified in New Zealand, the ministry said.</p>
<p><strong>Genome sequencing begins<br />
</strong>Genome sequencing of the 13 positive test results will begin today.</p>
<p>Slightly over half of the crew had been at sea since February.</p>
<p>The <i>Viking Bay </i>was <a href="https://www.rnz.co.nz/news/national/446502/covid-19-uncertainty-remains-over-vessels-requests-to-dock">anchored off the coast of Taranaki</a> for almost a week after being denied permission to dock in New Plymouth, and sailed <a href="https://www.rnz.co.nz/news/national/446700/fishing-vessel-with-covid-19-cases-essentially-a-quarantine-facilitysailed">into Wellington on Monday</a>.</p>
<p>The ministry said plans were in case any of the five crew members remaining on the <i>Viking Bay</i> developed symptoms or be confirmed with covid-19.</p>
<p>Bringing the ship back into port and transferring the crew to an onshore quarantine facility allowed the public health risks to be managed appropriately, and the crew to be kept in isolation until they had completed their 14 days isolation and recovered, the ministry said in a statement.</p>
<p><em>This article is republished under a community partnership agreement with RNZ.</em></p>
]]></content:encoded>
					
		
		
			</item>
	</channel>
</rss>
